Maximum power operation of interacting molecular motors

We study the mechanical and thermodynamic properties of different traffic models for kinesin which are relevant in biological and experimental contexts. We find that motor-motor interactions play a fundamental role by enhancing the thermodynamic efficiency at maximum power of the motors, as compared to the non-interacting system, in a wide range of biologically compatible scenarios. We furthermore consider the case where the motor-motor interaction directly affects the internal chemical cycle and investigate the effect on the system dynamics and thermodynamics.Comment: 19 pages, 22 figure

Efficiency at maximum power of motor traffic on networks

We study motor traffic on Bethe networks subject to hard-core exclusion for both tightly coupled one-state machines and loosely coupled two-state machines that perform work against a constant load. In both cases we find an interaction-induced enhancement of the efficiency at maximum power (EMP) as compared to non-interacting motors. The EMP enhancement occurs for a wide range of network and single motor parameters and is due to a change in the characteristic load-velocity relation caused by phase transitions in the system. Using a quantitative measure of the trade-off between the EMP enhancement and the corresponding loss in the maximum output power we identify parameter regimes where motor traffic systems operate efficiently at maximum power without a significant decrease in the maximum power output due to jamming effects.Comment: 9 pages, 9 figures, submitted to Phys. Rev.

Heat fluctuations and fluctuation theorems in the case of multiple reservoirs

We consider heat fluctuations and fluctuation theorems for systems driven by multiple reservoirs. We establish a fundamental symmetry obeyed by the joint probability distribution for the heat transfers and system coordinates. The symmetry leads to a generalisation of the asymptotic fluctuation theorem for large deviations at large times. As a result the presence of multiple reservoirs influence the tails in the heat distribution. The symmetry, moreover, allows for a simple derivation of a recent exact fluctuation theorem valid at all times. Including a time dependent work protocol we also present a derivation of the integral fluctuation theorem.Comment: 27 pages, 1 figure, new extended version, to appear in J. Stat. Mech, (2014

Bound particle coupled to two thermostats

We consider a harmonically bound Brownian particle coupled to two distinct heat reservoirs at different temperatures. We show that the presence of a harmonic trap does not change the large deviation function from the case of a free Brownian particle discussed by Derrida and Brunet and Visco. Likewise, the Gallavotti-Cohen fluctuation theorem related to the entropy production at the heat sources remains in force. We support the analytical results with numerical simulations

Sisyphus Effect in Pulse Coupled Excitatory Neural Networks with Spike-Timing Dependent Plasticity

The collective dynamics of excitatory pulse coupled neural networks with spike timing dependent plasticity (STDP) is studied. Depending on the model parameters stationary states characterized by High or Low Synchronization can be observed. In particular, at the transition between these two regimes, persistent irregular low frequency oscillations between strongly and weakly synchronized states are observable, which can be identified as infraslow oscillations with frequencies 0.02 - 0.03 Hz. Their emergence can be explained in terms of the Sisyphus Effect, a mechanism caused by a continuous feedback between the evolution of the coherent population activity and of the average synaptic weight. Due to this effect, the synaptic weights have oscillating equilibrium values, which prevents the neuronal population from relaxing into a stationary macroscopic state.Comment: 18 pages, 24 figures, submitted to Physical Review

Pathways of mechanical unfolding of FnIII10: Low force intermediates

We study the mechanical unfolding pathways of the $FnIII_{10}$ domain of fibronectin by means of an Ising--like model, using both constant force and constant velocity protocols. At high forces and high velocities our results are consistent with experiments and previous computational studies. Moreover, the simplicity of the model allows us to probe the biologically relevant low force regime, where we predict the existence of two intermediates with very close elongations. The unfolding pathway is characterized by stochastic transitions between these two intermediates

Equilibrium-like fluctuations in some boundary-driven open diffusive systems

There exist some boundary-driven open systems with diffusive dynamics whose particle current fluctuations exhibit universal features that belong to the Edwards-Wilkinson universality class. We achieve this result by establishing a mapping, for the system's fluctuations, to an equivalent open --yet equilibrium-- diffusive system. We discuss the possibility of observing dynamic phase transitions using the particle current as a control parameter

Shape fluctuations and elastic properties of two-component bilayer membranes

The elastic properties of two-component bilayer membranes are studied using a coarse grain model for amphiphilic molecules. The two species of amphiphiles considered here differ only in their length. Molecular Dynamics simulations are performed in order to analyze the shape fluctuations of the two-component bilayer membranes and to determine their bending rigidity. Both the bending rigidity and its inverse are found to be nonmonotonic functions of the mole fraction $x_{\rm B}$ of the shorter B-amphiphiles and, thus, do not satisfy a simple lever rule. The intrinsic area of the bilayer also exhibits a nonmonotonic dependence on $x_{\rm B}$ and a maximum close to $x_{\rm B} \simeq 1/2$.Comment: To appear on Europhysics Letter

Current fluctuations in systems with diffusive dynamics, in and out of equilibrium

For diffusive systems that can be described by fluctuating hydrodynamics and by the Macroscopic Fluctuation Theory of Bertini et al., the total current fluctuations display universal features when the system is closed and in equilibrium. When the system is taken out of equilibrium by a boundary-drive, current fluctuations, at least for a particular family of diffusive systems, display the same universal features as in equilibrium. To achieve this result, we exploit a mapping between the fluctuations in a boundary-driven nonequilibrium system and those in its equilibrium counterpart. Finally, we prove, for two well-studied processes, namely the Simple Symmetric Exclusion Process and the Kipnis-Marchioro-Presutti model for heat conduction, that the distribution of the current out of equilibrium can be deduced from the distribution in equilibrium. Thus, for these two microscopic models, the mapping between the out-of-equilibrium setting and the equilibrium one is exact

Work and heat probability distributions in out-of-equilibrium systems

We review and discuss the equations governing the distribution of work done on a system which is driven out of equilibrium by external manipulation, as well as those governing the entropy flow to a reservoir in a nonequilibrium system. We take advantage of these equations to investigate the path phase transition in a manipulated mean-field Ising model and the large-deviation function for the heat flow in the asymmetric exclusion process with periodically varying transition probabilities.Comment: Contribution to Proceedings of "Work, Dissipation, and Fluctuations in Nonequilibrium Physics", Brussels, 200